Ecology, Evolution and Behavior

Windmill

The graduate program in Ecology, Evolution & Behavior is composed of 20 faculty members that share a fundamental interest in ecological and evolutionary processes.

The EEB faculty has a diverse range of research interests. These include: behavioral ecology, community ecology, ecosystem ecology, evolutionary ecology, life history evolution, molecular evolution, physiological ecology, plant-animal interactions, population ecology, sexual selection and systematics. EEB is particularly strong in the study of plant-animal interactions, behavioral ecology and evolutionary genetics.

Our goal is to develop broadly trained biologists that have both the conceptual tools and expertise in research design necessary to address fundamental ecological and evolutionary questions. To meet this goal, our graduate curriculum includes a series of core courses for first year students, advanced courses in areas of faculty expertise, a seminar series that focuses on research design (BIOS 916), and a seminar series that focuses on completed research.


Core Faculty


Faculty Member Research Interests
Gwen Bachman Physiological and behavioral ecology
Alexandra Basolo Sexual selection; life-history evolution; predator-prey interactions/Genetics and evolution of color patterns, of life history traits, and of sexually selected traits
Chad Brassil Mathematical modeling of ecological interactions
Ryan Bickel Insect evolution and development
Alan Bond Animal Cognition and Behavioral Complexity
Jennifer Brisson Genetic and environmental contributions to morphological differences within and between species
John DeLong

Ecological and evolutionary energetics, human population ecology, body size evolution, predator-prey ecology

Valery Forbes Aquatic Ecology and Ecotoxicology; Population Modeling; Contaminated Sediments; Risk Assessment
Sheri Fritz Paleoecology, paleoclimatology, and aquatic ecology
Robert Gibson Behavior, ecology and evolution
Lawrence Harshman Life history evolution, reproduction, and biological responses to stress and pathogens
Eileen Hebets Animal behavior: complex signal evolution
Alan Kamil Behavioral ecology of learning and memory
Johannes (Jean) Knops Ecosystem and plant ecology; plant species impact on nutrient cycling
Diana Pilson Ecological genetics of plant-insect interactions
Sabrina Russo Ecology, especially of tropical forests, ecological statistics and modeling
Stacy Smith Evolutionary genetics, molecular phylogenetics, plant-pollinator interactions
Jay Storz Evolutionary genetics, evolutionary genomics, and evolutionary physiology
Brigitte Tenhumberg Population dynamics and optimal decisions in insect behavior and life history
William Wagner Behavioral ecology; sexual selection
Karrie Weber Microbial Biogeochemistry, Microbial Ecology, Geomicrobiology
Anthony Zera Evolutionary physiology; endocrine adaptations; wing polymorphism/Evolutionary genetics of wing polymorphism


Courtesy Faculty

Faculty Member Research Interests
Rick Bevins Behavioral neuroscience or biopsychology
Peter Calow Ecological risk management
Trish Freeman Mammalian Systematist and Functional Morphologist
Mace Hack Behavioral ecology
Kyle Hoagland Water Quality, Aquatic Ecology of Lakes, Streams, Reservoirs, Wetlands
Dan Leger Bird song, animal communication, animal behavior, evolutionary psychology, and biological bases of behavior
Larkin Powell Conservation biology and wildlife Ecology
Thomas Powers Evolutionary biology of nematodes
Jeffrey Stevens Behavioral ecology, animal cognition, and decision making
Drew Tyre Statistical ecology, theoretical ecology and special distribution models
David Wedin Plant and ecosystem ecology


Genetics, Genomics, and Bioinformatics

DNA

The graduate program in Genetics, Genomics, and Bioinformatics (GGB) is composed of 13 faculty members that share a fundamental interest in genetics, genomics and bioinformatics processes. The Genetics faculty have a diverse range of research interests. The GGB GREG is particularly strong in evolutionary genetics and bioinformatics.

Most programs are influenced by evolutionary concerns and use tools from bioinformatics to address fundamental questions in genetics. These questions range from gene structure and function to the evolution of plant-insect interactions. Several faculty members use Drosophila and other insects as their research organism. Other faculty members use the model plants maize and Arabidopsis.

Our goal is to develop broadly trained biologists that have both the conceptual tools and expertise in research design necessary to address fundamental biological questions. To meet this goal, our graduate curriculum includes advanced courses covering molecular genetics, developmental genetics, and genomics.

Core Faculty

Faculty Member Research Interests
Alexandra Basolo Sexual selection; life-history evolution; predator-prey interactions/Genetics and evolution of color patterns, of life history traits, and of sexually selected traits
Jennifer Brisson Genetic and environmental contributions to morphological differences within and between species
Alan Christensen Plant mitochondrial genetics
Lawrence Harshman Life history evolution, reproduction, and biological responses to stress and pathogens
Etsuko Moriyama Bioinformatics, molecular evolution, and molecular population genetics
Hideaki Moriyama Structural biology
John Osterman Gene structure and function in maize and Arabidopsis
Diana Pilson Ecological genetics of plant-insect interactions
Jay Storz Evolutionary genetics, evolutionary genomics, and evolutionary physiology
Bin Yu Plant Molecular Biology & Genetics
Anthony Zera Evolutionary physiology; endocrine adaptations; wing polymorphism/Evolutionary genetics of wing polymorphism
Chi Zhang Computational Systems Biology

Courtesy Faculty

Faculty Member Research Interests
Andrew Benson Genome evolution
Samodha Fernando Microbial structure-function relationships to improve human and animal nutrition
Steve Ladunga Bioinformatics
Jean-Jack Riethoven Bioinformatics, gene splicing
Blair Siegfried Insecticide resistance evolution
Jeffrey Mower Origin and evolution of genome complexity


Integrative Evolutionary Biology

The graduate program in Integrative Evolutionary Biology is a new program, formulated in the Fall, 2009. It is a dynamic, interactive, and well-funded group of facultyGrasshopper genome sharing a common interest in multidisciplinary studies of evolutionary biology. The group has diverse research interests that include the following: physiological, biochemical and molecular studies of life history evolution; genomic- to-physiological investigations of complex adaptations such as dispersal polymorphism; molecular-population-genetic and functional studies of hemoglobin adaptations in mammals; molecular evolutionary and bioinformatic analyses of protein functions and multi-gene families, neurophysiological, ecological, and genetic investigations of invertebrate behavior, with a special focus on sexual selection; and ecological, biochemical, and phylogenetic investigations of metabolic pathway evolution in plants and animals.

Core Faculty

Faculty Member Research Interests
Zoya Avramova Relationship between chromatin structure and gene function in animal & plants
Alexandra Basolo Sexual selection; life-history evolution; predator-prey interactions/Genetics and evolution of color patterns, of life history traits, and of sexually selected traits
Jennifer Brisson Genetic and environmental contributions to morphological differences within and between species
Lawrence Harshman Life history evolution, reproduction, and biological responses to stress and pathogens
Eileen Hebets Animal behavior: complex signal evolution
Etsuko Moriyama Bioinformatics, molecular evolution, and molecular population genetics
Hideaki Moriyama Structural biology
Stacey Smith Evolutionary genetics, molecular phylogenetics, plant-pollinator interactions
Jay Storz Evolutionary genetics, evolutionary genomics, and evolutionary physiology
William Wagner Behavioral ecology; sexual selection
Anthony Zera Evolutionary physiology; endocrine adaptations; wing polymorphism/Evolutionary genetics of wing polymorphism


Microbiology and Molecular Biology

Microbe

The graduate program in Microbiology and Molecular Biology is composed of faculty, postdoctoral fellows and graduate students with research interests that encompass a wide range of research and training opportunities for graduate students in preparation for rewarding careers in sciences.

Programs include emphases in many areas of molecular biology and microbiology including bacteriology, ecology, evolution, extremophiles, genetics, gene regulation, immunology, pathobiology, systematics and virology.

Interdisciplinary training is an essential component of all participatory research groups. A microbiology seminar series (BIOS 915M) provides a common forum for research presentation to both local participants and invited speakers. The Microbiology and Molecular Biology GREG has a strong record of placing its graduates in industry and academics.

Two areas of emphasis include pathobiology and microbial physiology.

The microbiology physiology emphasis focuses on model microbial systems using bioinformatic, proteomic and genomic strategies to get answers about fundamental questions on basic molecular and cellular processes in microbes and between microbes and their environments. Topics include studies on mRNA decay, global gene regulation and silencing, quorum sensing, UV and detergent resistance, lipopolysaccharide function, and evolutionary mechanisms in a range of prokaryotic and eukaryotic microbes. Training in these programs at the University of Nebraska-Lincoln include strong preparation in biochemistry, genetics and molecular biology. Research goals include the development of better strategies for the management and manipulation of microbial systems for basic and applied outcomes.

The comparative pathobiology emphasis addresses recent research findings which have shown unexpected similarities in the fundamental properties of some pathogenic microorganisms, and disease responses pertinent to animals, humans, and plants. The University of Nebraska-Lincoln has maintained a very strong research and teaching program in infectious diseases. This program seeks to explore the commonalties in animal, human, and plant pathogens and their hosts with the expectation of discovering novel infectious disease processes in all organisms. These include mechanisms involved in recognition between host and pathogens as well as adaptive responses in host plants and animals to stimuli generated by pathogens. Research emphasis efforts to improve disease management, decrease costs associated with infectious diseases, improve animal, human and plant health and generate proprietary novel products for commercial development.

Further Information

Core Faculty

Faculty Member Research Interests
Peter Angeletti Replication and persistance of human papillomaviruses (HPVs)
Audrey Atkin Regulation of mRNA stability in yeast, Gene regulation in fungi
Zoya Avramova Relationship between chromatin structure and gene function in animal & plants
Paul Blum Molecular chaperones, thermophilic biology and metabolic engineering
Deborah Brown CD4 T-cell responses to influenza virus, mechanisms of protection against lethal infection
Heriberto Cerutti Regulation gene expression, Genomics, RNA interference, Algal biotechnology, Renewable biofuels
Catherine Chia Membrane-cytoskeletal interactions
Scott Gardner Parasitology,Phylogenetics and host-parasite coevolution
Qingsheng Li

HIV; transmission ;vaccine; prevention

Hideaki Moriyama Structural biology
Thomas Morris Virus diseases of plants; molecular genetics of plant viruses; comparative virology
Kenneth Nickerson Microbial physiology, Fungal dimorphism, Quorum sensing in fungi and algae
Wayne Riekhof Lipid metabolism, transport, and storage; algal biology; fungal biology; metabolic regulation; biochemical genetics; high-throughput screening
Karrie Weber Microbial Biogeochemistry, Microbial Ecology, Geomicrobiology
Charles Wood Molecular virology and virol oncology; pathogenesis of human immunodeficiency virus and human herpesvirus
Luwen Zhang Herpes virus latency, interferon regulatory factors

Courtesy Faculty

Faculty Member Research Interests
James Alfano Interactions of bacterial pathogens with plants
Raul Barletta Genetics, antibiotics, mycobacteria
Andrew Benson Microbial genomics and population genetics
Nicole Buan Microbial physiology, Redox biochemistry of biological methane production
Concetta DiRusso Fatty acid metabolism and fatty acid-dependent gene regulation
Roy French Molecular biology of RNA viruses utilizing wheat viruses and wheat as model systems
Heather Hallen- Adams The role and ecology of fungi in the human microbiome; and Fusarium mycotoxins
Steve Harris Regulation of morphogenesis in the filamentous fungus Aspergillus nidulans
Richard Goodman

Evaluating risks of food allergy and celiac disease from Genetically Modified crops and novel food ingredients

Robert Hutkins Microbial physiology, food safety, metabolism
Clinton Jones Latency of a-herpes viruses, apotosis
Michael Meagher Recombinant protein production from the methyltrophic yeast Pichia pastoris during cell density fermentation and optimization of fermentation conditions
Fernando Osorio Animal virus pathogenesis
Asit Pattnaik Molecular biology of RNA viruses, virus-host cell interactions, attenuated viruses
Paul Staswick Plant Hormone Metabolism, Hormone Signaling, Disease resistance, Regulation of gene expression, Transgenic plants
Jeanette Thurston-Enriquez Environmental pathogens, water quality
James Van Etten Molecular characterization of algal viruses.Viruses of Eukaryotic Algae
Jens Walter Ecology and evolution of bacterial gut symbionts of vertebrates, and dietary modulation of the gut microbiota to improve human health
 Matthew Wiebe Host defenses responsive to viral DNA, and the mechanisms pathogens use to avoid them
Shi- Hua Xiang

HIV envelope structure and function;AIDS vaccine design and development;Commensal bacteria for anti-HIV infection and transmission.

Anne Vidaver Biology of host plant-microbe interaction.Phytobacteriology


Plant Systems Biology

flower

The graduate program in Plant Systems Biology is composed of 16 faculty members that share a fundamental interest in understanding molecular, cellular and developmental processes in plants.

Powerful new methods in molecular genetics, biochemistry, and genomics are applied to analyze nearly every process in plants, such as growth and development, environmental and biotic stresses, photosynthesis, nuclear-organelle interactions, gene expression, DNA repair/recombination, and epigenetic phenomena.

The faculty research interests overlap in these areas and there is much interaction between the various groups. Because of these wide diversity in faculty interests, prospective students are encouraged to pursue the application process regardless of their prior areas of study within the biological sciences.

The program's goal is to provide students with the background and training appropriate for a career in academics, government, or the private sector.

Our graduate curriculum includes two introductory seminars, a set of core courses to be completed within the first year, and initial research training through laboratory rotations. In consultation with faculty advisers, students develop the remainder of their course program and choose a research topic according to their interests and career goals.

Further Information

Graduate Training in Plant Systems Biology

Core Faculty

Faculty Member Research Interests
Zoya Avramova Relationship between chromatin structure and gene function in animal & plants
Paul Blum Molecular chaperones, thermophilic biology and metabolic engineering
Heriberto Cerutti Regulation gene expression, Genomics, RNA interference, Algal biotechnology, Renewable biofuels
Alan Christensen Plant mitochondrial genetics
Etsuko Moriyama Bioinformatics, molecular evolution, and molecular population genetics
Thomas Morris Virus diseases of plants; molecular genetics of plant viruses; comparative virology
John Osterman Gene structure and function in maize and Arabidopsis
Bin Yu

Plant Molecular Biology & Genetics

Tom Elthon Function of plant mitochondria; plant responses to the environment
Sally Mackenzie Plant mitochondrial genetics, nuclear-mitochondrial genetic interactions, genomics in legume species
Chi Zhang Computational Systems Biology


Courtesy Faculty

Faculty Member Research Interests
James Alfano Interactions of bacterial pathogens with plants
Peter Baenziger
Steve Harris Regulation of morphogenesis in the filamentous fungus Aspergillus nidulans
Amit Mitra Vector, Plant Transformation
Paul Staswick Plant Hormone Metabolism, Hormone Signaling, Disease resistance, Regulation of gene expression, Transgenic plants
James Van Etten Molecular characterization of algal viruses.Viruses of Eukaryotic Algae
Thomas Clemente Functional genomics & genetic engineering of plant germplasm
Michael Fromm Stress signaling and improvement of drought and salt tolerance of plants
Jeffrey Mower Origin and evolution of genome complexity
Julie Stone Molecular mechanisms controlling programmed cell death (PDC) in plants
Donald Weeks
Richard Wilson Molecular Plant-Fungus Interactions


Plant Pathology

The Plant Pathology Department offers a wide range of research opportunities in both basic and applied topics. Our graduate programs are designed around your own research, extension, and career goals. Opportunities for research at both the M.S. and Ph.D. levels include: molecular plant pathology, fungal molecular genetics, phytobacteriology, nematology, virology, epidemiology, biocontrol, disease resistance and soilborne diseases. Inter-disciplinary programs in biotechnology, plant breeding, microclimatology, plant stress, pest management, and international agriculture are also available. The department has state of the art facilities and instrumentation to support research interests ranging from the most applied to the most basic. Laboratory based research is conducted in Plant Sciences Hall with ancillary greenhouses, growth chambers and small plots available, as needed. Field research problems may be carried out with faculty in Lincoln or the Research and Extension Centers at Clay Center, North Platte, and Scottsbluff.

For graduate programs, the Department of Plant Pathology is part of the School of Biological Sciences and our graduate degrees are granted through the School. Application forms for admission to the department will be sent upon request. All students are required to take the Graduate Record Exam (aptitude and advanced portion, usually biology) at their own expense before being accepted by the department. In addition, transcripts of Colleges/Universities attended, reference letters and a statement, not exceeding one typewritten page, of your long-term professional goals will be needed. A TOEFL exam score for students whose native language is not English is also required (550 minimum).

Students may apply for entry into the graduate program at any time during the year. Decisions regarding program admission are made monthly, as application files are completed; however decisions regarding Departmental Graduate Research Assistantships are made twice annually, in April and November for funding beginning July 1 and January 1, respectively. In order to fairly consider all applicants for assistantships, 1 March and 1 October have been established as deadline dates. If your file is not complete by these dates it will be held and not be considered for a Departmental Graduate Research Assistant until the next funding period.

A few State funded Departmental Graduate Research Assistantships are available to students admitted in our department.; These assistantships are granted separate from admission to the graduate program and area by the Department Head through individual faculty on a competitive basis. Many individual faculty have grant programs which also provide research assistantships and are awarded by the individual faculty investigator. Applicants may inquire directly to individual faculty about the availability of these funds.

We are a medium-sized department of 16 faculty who are highly interactive and compatible. Our graduates are competitive in the scientific arena and are sought for positions in academe, government and the private sector. We are proud of our graduate program and hope the foregoing comments concerning our department and the University will help you reach a decision to apply to the University of Nebraska for graduate work.

Further Information

James R. Steadman, Professor & Graduate Advisor
jsteadman1@unl.edu

Plant Pathology Department

Core Faculty

Faculty Member Research Interests
Gerard Adams Tree & Forest Pathology 
James Alfano Molecular Genetics of Plant-Bacterial Interactions
Roy French Molecular biology of RNA viruses utilizing wheat viruses and wheat as model systems
Deanna Funnell-Harris Sorghum-Fungus Interactions
Loren Giesler Diseases of Soybeans, Alfalfa and Landscape Ornamentals including Trees
Steve Harris Molecular Genetics of Pathogenic Fungi
Robert Harveson Diseases of Sugar Beets, Dry Edible Beans, Chicory, Potatoes, Proso Millet and Sunflowers
Tamra Jackson Crop Production and Diseases of Corn and Sorghum
 Bo Liu Cropping Systems Disease
Amit Mitra Plant Vector Transformation and Gene Expression
Richard Wilson Molecular Plant-Fungus Interactions
Tom Powers Plant Parasitic Nematodes
James Steadman Disease Management/Resistance
Satyanarayana Tatineni Molecular Biology of Wheat Viruses
James Van Etten Molecular characterization of algal viruses.Viruses of Eukaryotic Algae
Stephen Wegulo Diseases of Small Grains, Forages and Ornamental Plants
Gary Yuen Biological Control of Diseases Caused by Fungal Pathogens


Courtesy Faculty

Faculty Member Research Interests
Jeff Bradshaw Field Crops Entomology
Rhae Drijber Soil Microbial Ecology
Heather Hallen-Adams Molds and Mycotoxins
Gary Hein Wheat Curl Mite Biology & Ecology 
Greg Kruger Cropping Systems
Thomas J Morris Virus diseases of plants; molecular genetics of plant viruses; comparative virology
Kenneth Nickerson Microbial physiology, Fungal dimorphism, Quorum sensing in fungi and algae


Parasitology

parasite

The graduate program in Parasitology is composed of composed of 6 faculty members with a diverse range of research interests, but the GREG is particularly strong in the study of ecology and evolution of parasitision.

Our goal is to develop broadly trained biologists that have both the conceptual tools and expertise in research design necessary to address fundamental questions. To meet this goal, our graduate curriculum includes a series of courses for first year students, advanced courses in areas of faculty expertise, active involvement with Cedar Point Biological Field Station, a seminar series that focuses on research design, and a seminar series that focuses on completed research.

Further Information

Harold W. Manter Parasitology Lab


 

 

 

 

 

Core Faculty

Faculty Member Research Interests
Scott Gardner Parasitology, Phylogenetics and host-parasite coevolution
Brigitte Tenhumberg Population dynamics and optimal decisions in insect behavior and life history
Charles Wood Molecular virology and virol oncology; pathogenesis of human immunodeficiency virus and human herpesvirus


Courtesy Faculty

Faculty Member Research Interests
Dennis Feely Cell biology of parasitic protozoans
Thomas Powers
Karl Reinhard Paleoparasitology


 

Plant Pathology